PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0116s0045.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 449aa    MW: 49499.5 Da    PI: 9.215
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0116s0045.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.35.1e-1736120898
                          -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                          + +++sgrl +p kf ++++g   +++ + l  + g++W+v l   ++ ++ +l +GW++Fv++  ++ gD++vF+++g+ +f   v +f
  Kalax.0116s0045.3.p  36 APHSSSGRLEIPHKFNQHIEGR--TNVWVLLSGRGGKVWRVGL--VRQHQTLFLNEGWSGFVRDSSVELGDTLVFEYNGDWQF--EVYIF 119
                          6678899********9888877..678899999**********..9*******************************998888..88888 PP

                          - CS
                   B3  98 r 98 
                          +
  Kalax.0116s0045.3.p 120 D 120
                          7 PP

2B3452e-14276366598
                          -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                          ++  +v+ s  l +p kf +eh   ++++++++l++ +g  W+v+   + k  + +++ +GW  Fv+an++++gD ++F+l+++   +++
  Kalax.0116s0045.3.p 276 MKIFNVSGSFTLKIPYKFSTEHL--PQCKTKVVLQTCEGSCWTVNSVPTTKVHTcHTFCGGWVAFVRANHIEAGDACIFQLVSE--CKML 361
                          55557888899***********6..458899**************955333333588889********************9873..3469 PP

                          EEEE- CS
                   B3  94 vkvfr 98 
                          v+++r
  Kalax.0116s0045.3.p 362 VHILR 366
                          99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.4E-2323124IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-2324124IPR015300DNA-binding pseudobarrel domain
CDDcd100171.34E-1529120No hitNo description
PROSITE profilePS5086314.26929122IPR003340B3 DNA binding domain
SMARTSM010195.9E-1331122IPR003340B3 DNA binding domain
PfamPF023621.5E-1435121IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-21264366IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-22265366IPR015300DNA-binding pseudobarrel domain
CDDcd100172.65E-18270366No hitNo description
PROSITE profilePS5086312.266272368IPR003340B3 DNA binding domain
SMARTSM010192.2E-7272368IPR003340B3 DNA binding domain
PfamPF023628.3E-13272366IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MRNSAKQKQA SKMATATTSA VKSSDGRKPH FIVTFAPHSS SGRLEIPHKF NQHIEGRTNV  60
WVLLSGRGGK VWRVGLVRQH QTLFLNEGWS GFVRDSSVEL GDTLVFEYNG DWQFEVYIFD  120
GSGCEKEVRE CMGNLGPNSR KKRERDEDES SGCVVKKKES IVCRSCTVDC VNEEPADLSA  180
AECQPGAPVG EPLALIVYEE PGPSNLSNGH PNYPPATALP SLCKFQSGTS GSTTKYKDVA  240
YKHTSQGKGS KLKFSASEEK ISRSFKSEFP HFVRVMKIFN VSGSFTLKIP YKFSTEHLPQ  300
CKTKVVLQTC EGSCWTVNSV PTTKVHTCHT FCGGWVAFVR ANHIEAGDAC IFQLVSECKM  360
LVHILREGRQ ISESNGGEKS KFRSLASLSN DIKKLGLGSK NSSHGYGLPQ EAVDWKAGKC  420
LSLKLLLKCR HFFLKQIIKM KSVGVTEN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.11e-15B3 family protein